In this study, it is aimed to investigate the graphitization effect on the performance of the multi walled carbon nanotube catalyst support for high temperature proton exchange membrane fuel cell (HT-PEMFC) application. Microwave synthesis method was selected to load Pt nanoparticles on both CNT materials. Prepared catalyst was analyzed thermal analysis (TGA), Transmission Electron Microscopy (TEM) and corrosion tests. TEM analysis proved that a distribution of Pt nanoparticles with a size range of 2.8–3.1 nm was loaded on the Pt/CNT and Pt/GCNT catalysts. Gas diffusion electrodes (GDE) were manufactured by an ultrasonic spray method with synthesized catalyst. Polybenzimidazole (PBI) membrane based Membrane Electrode Assembly (MEA) was prepared for observe the performance of the prepared catalysts. The synthesized catalysts were also tested in a HT-PEMFC environment with a 5 cm² active area at 160 °C without humidification. This study demonstrates the feasibility of using the microwave synthesis method as a fast and effective method for preparing high performance Pt/CNT and Pt/GCNT catalyst for HT-PEMFC. The HT-PEMFC performance evaluation shows current densities of 0.36 A/cm²0.30 A/cm² and 0.20 A/cm² for the MEAs prepared with Pt/GCNT, Pt/CNT and Pt/C catalysts @ 0.6 V operating voltage, respectively. AST (Accelerated Stress Test) analyzes of MEAs prepared with Pt/GCNT and Pt/CNT catalysts were also performed and compared with Pt/C catalyst. According to current density @ 0.6 V after 10,000 potential cycles, Pt/GCNT, Pt/CNT and Pt/C catalysts can retain 61%, 67% and 60% of their performance, respectively.